Congratulations to Dr. Ethan Stanifer, who successfully defended his thesis entitled, “Investigating the relationships between disorder, structure, and dynamics in amorphous systems” on June 25th!
As a research lab, we have taken time away from work for #shutdownSTEM and Juneteenth reflect on how we can actively promote anti-racism. We must start by acknowledging that BlackLivesMatter and that systemic racism negatively impacts people of color in many ways, including raising significant barriers that impede them as they perform scientific research and progress in academia. We love doing science, and all people deserve that thrill of discovery. How many great scientists are we missing because systemic racism blocked them from that path?Moreover, research demonstrates that science and engineering are better when science is more diverse: https://www.pnas.org/content/101/46/16385 . And there are plenty of examples of times when science and technology has failed us because the scientists/designers were not diverse: https://reporter.rit.edu/tech/bigotry-encoded-racial-bias-technology .Given this, we must take active steps to make our research group and society more inclusive, and very specific more inclusive of Black and Brown students and scientists. Small steps include expanding our work on partnerships between Minority Serving Institutions and Primarily White Institutions, contributing to the Physics Department’s Diversity and Inclusion Committee, and advocating for changes to GRE and other departmental testing requirements. We can ensure that the speakers we invite to give seminars are diverse, and we can participate in mentoring and outreach programs. We can engage in public policy debates as private citizens. This is a process, so we are still engaged in thinking about changes we can make to improve. Please stay tuned.
A great collaboration with Karen Kasza’s group at Columbia has led to a paper we’re excited about that just appeared in Proceedings of the National Academy of Sciences. Our former REU (research experiences for undergraduates) student Leo Sutter is a co-author, as are former postdocs Matthias Merkel and Gonca Erdemci-Tandogan. Here’s a link to a news article about the research : https://thecollege.syr.edu/news-all/news-2020/physics-behind-tissue-growth-embryo/
And here’s a link to the manuscript: Xun Wang*, Matthias Merkel*, Leo B. Sutter*, Gonca Erdemci-Tandogan, M. Lisa Manning, Karen E. Kasza. “A solid-to-fluid transition is predicted by cell shape and alignment in an anisotropic tissue of the developing fly embryo”, Proceedings of the National Academy of Sciences May 2020, , https://doi.org/10.1073/pnas.1916418117 , arXiv: https://arxiv.org/abs/2005.07283 (2020).
Former postdoctoral associate Peter Morse, former graduate student Sven Wijtmans, and Lisa Manning worked with Martin Van Hecke’s lab to understand how contact changes correlate with plasticity in jammed soft spheres. We found that contact changes are not one-to-one with plastic events, even in the limit of zero pressure. This is interesting because in hard spheres those two types of events always occur together. We also show that the statistics of nonlinear plastic events show the same scaling as the linear response, again highlighting the zero-pressure limit is singular.
Peter Morse, Merlijn van Deen, Sven Wijtmans, Martin Van Hecke, M. L. Manning, “Two classes of events in sheared particulate matter,” Physical Review Research 2 023179, https://link.aps.org/doi/10.1103/PhysRevResearch.2.023179 arXiv:1907.10198 (2020).
Former postdoctoral associate Gonca Erdemci-Tandogan and Lisa Manning worked with Heidi Hehnly’s lab (SU Biology) and Jeff Amack’s lab (SUNY Upstate Cell and Developmental Biology) to understand cytokinetic bridges that occur during formation of Kupffer’s vesicle, the organ responsible for left-right symmetry breaking in zebrafish. The manuscript recently appeared in Nature Communications: https://www.nature.com/articles/s41467-020-15002-8
Our paper, “Glassy dynamics in models of confluent tissue with mitosis and apoptosis” just appeared in Soft Matter.
Recent work on particle-based models of tissues has suggested that any finite rate of cell division and cell death is sufficient to fluidize an epithelial tissue. At the same time, experimental evidence has indicated the existence of glassy dynamics in some epithelial layers despite continued cell cycling. To address this discrepancy, we quantify the role of cell birth and death on glassy states in confluent tissues using simulations of an active vertex model that includes cell motility, cell division, and cell death. Our simulation data is consistent with a simple ansatz in which the rate of cell-life cycling and the rate of relaxation of the tissue in the absence of cell cycling contribute independently and additively to the overall rate of cell motion. Specifically, we find that a glass-like regime with caging behavior indicated by subdiffusive cell displacements can be achieved in systems with sufficiently low rates of cell cycling.
Lisa was named a 2019 APS Fellow, for “microscopic theory of flow and rigidity in disordered and biological materials”, from the Division of Condensed Matter Physics. More information about the award can be found here:
On October 4, 2019, Lisa attended the UC Santa Barbara Alumni Awards reception ( https://www.ucsbalum.com/events/awards/alumni-awards-dinner ) and received the “Emerging Leader” award, for her “early career achievements in physics research and her commitment to advancing STEM to diverse audiences.”
We have posted a manuscript on BioRXiv: Xun Wang*, Matthias Merkel*, Leo B. Sutter*, Gonca Erdemci-Tandogan, M. Lisa Manning, Karen E. Kasza. “Anisotropy links cell shapes to a solid-to-fluid transition during convergent extension”, https://doi.org/10.1101/781492 (2019). In this manuscript we use a combination of vertex models and experimental analysis of convergent extension in the fruit fly to understand how the fluid-solid transition is affected by anisotropic stresses.
We posted a joint manuscript between the Manning group (Sussman, Manning) and the Gardel lab (Devaney, Gardel) on BioRXiv, titled, “Cell division Rate Controls Cell Shape Remodeling in Epithelia”, https://www.biorxiv.org/content/10.1101/804294v1. We use a combination of vertex modeling and experiments to demonstrate that cell shape (and not number density) governs cell movements in epithelia, and that cell divisions generate the dominant active stress fluctuations that cause cell movements.