Publications

Manning CV

Preprints, in preparation

  1. Sven Wijtmans, M. L. Manning, “Disentangling sound modes and defects in disordered solids,” submitted. arXiv:1502.00685 (2017).
  2. X. Yang, Dapeng Bi, M. Czajkowski, M. Merkel, M. L. Manning, M. C. Marchetti, “Correlating Cell Shape and Cellular Stress in Motile Confluent Tissues”, submitted (2017) arXiv:1704.05951.
  3. Agnik Dasgupta1, Matthias Merkel2, Andrew E. Jacob1, Jonathan Dawson2, M. Lisa Manning2 and Jeffrey D. Amack, “Asymmetric cell volume changes regulate epithelial remodeling of the left-right organizer”, submitted (2017).
  4. Franziska Wetzel*, Anatol Fritsch*, Dapeng Bi*, Roland Stange, Steve Pawlizak, Tobias Kiessling, Lars-Christian Horn, Klaus Bendrat, Maja Oktay, Axel Niendorf, John Condeelis, Michael Hckel, Cristina Marchetti, Lisa Manning, Josef A. Kaes, “Why do rigid tumours contain soft cancer cells?,” submitted, (2017).*these authors contributed equally
  5. Fabio Giavazzi, Matteo Paoluzzi, Marta Macchi, Dapeng Bi, Giorgio Scita, M. Lisa Manning, Roberto Cerbino, M. Cristina Marchetti. “Flocking Transition in Confluent Tissues” submitted, arXiv:1706.01113 (2017).
  6. Matthias Merkel and Lisa Manning. A geometrically controlled rigidity transition in a model for confluent 3D tissues, arXiv:1706.02656 submitted (2017).
  7. Daniel Sussman, Jennifer Schwarz, M. Cristina Marchetti, M. Lisa Manning. Soft yet sharp interfaces in vertex-based models for confluent tissues. In preparation (2017)
  8. G. Passucci, M.E. Brasch, N. O. Deakin, C. E. Turner, J. H. Henderson, M. L. Manning, “Identifying the mechanisms that generate super-diffusivity in mouse fibroblast trajectories on 2D substrates”, in preparation, (2017).
  9. Peter Morse, Merlijn van Deen, Sven Wijtmans, Martin Van Hecke, M. L. Manning, “Distinguishing rearrangement events in disordered solids as a function of pressure,” in preparation, (2017).
  10. G. Passucci, M.E. Brasch, N. O. Deakin, C. E. Turner, J. H. Henderson, M. L. Manning, “Polarization of cells during controlled changes to substrate nanotopography,” in preparation, (2017).
  11. M. Czajkowski, Dapeng Bi, M. L. Manning, M. C. Marchetti, A Hydrodynamic Model for the Density-Independent Flocking Transition in Confluent Tissues, in preparation (2017).

Peer-reviewed publications

  1. M. Merkel and M. L. Manning. “Using cell deformation and motion to predict forces and collective behavior in morphogenesis.” Invited review, Seminars in Cell and Developmental Biology (2016).
  2. Dapeng Bi, X. Yang, M. C. Marchetti, M. L. Manning, “Motility-driven glass transitions in biological tissues,” Phys. Rev X 6 021011 arXiv:1509.06578 http://dx.doi.org/10.1103/PhysRevX.6.021011 (2016).
  3. [pdf] Dapeng Bi, J. Lopez, J. Schwarz, M. L. Manning, “A density-independent rigidity transition in biological tissues,” Nature Physics 11 1074-1079 doi:10.1038/nphys3471 arXiv:1409.0593, (2015).
    recommended in F1000Prime as being of special significance in its field by F1000 Faculty Member Xavier Trepat. http://f1000.com/prime/726043939?subscriptioncode=b0d58b25-d44e-4cfb-915c-7bfb1c97695f
  4. Steve Pawlizak, Anatol Fritsch, Steffen Grosser, Dave Ahrens, Tobias Thalheim, Stefanie Riedel, Tobias Kießling,  Mareike Zink, M. Lisa Manning, and Josef A. Käs, “Testing the differential adhesion hypothesis across the epithelial−mesenchymal transition”, New Journal of Physics 17, 24 August http://dx.doi.org/10.1088/1367-2630/17/8/083049 (2015).
    highlighted in a “Perspective” article in the new journal of physics by Dr. Fredberg and Tambe: http://iopscience.iop.org/article/10.1088/1367-2630/17/9/091001
  5. Jin-Ah Park, Jae Hun Kim, Dapeng Bi, Jennifer A. Mitchel, Nader Taheri Qazvini, Kelan Tantisira, ChanYoung Park, Maureen McGill, Sae-Hoon Kim, Robert Steward, Jr., Stephanie Burger, Weiliang Qiu, Scott H. Randell, Alvin Kho, Dhananjay Tambe, Corey Hardin, Stephanie A. Shore, Elliot Israel, David A. Weitz, Daniel J. Tschumperlin, Scott T. Weiss, Elizabeth P. Henske, M. Lisa Manning, James P. Butler, Jeffrey M. Drazen, Jeffrey J. Fredberg, “Unjamming and cell shape in the asthmatic airway epithelium,”  Nature Materials 14 1040–1048, doi:10.1038/nmat4357 (2015).
    highlighted in a news and views article in Nature Materials by Dr. Swartz: http://www.nature.com/nmat/journal/v14/n10/full/nmat4434.html
  6. [pdf] Danielle S. Bassett, Eli T. Owens, Mason A. Porter, M. Lisa Manning, Karen E. Daniels. “Practical Methods for the Examination of Force Chain Network Architecture in Granular Materials” Soft Matter DOI: 10.1039/C4SM01821D, arXiv:1408.3841 (2015). (Cover article)
  7. [pdf] M. L. Manning and A. J. Liu, “A random matrix definition of the boson peak,”  Europhysics Letters, 109 36002 arXiv:1307.5904 (2015).
  8. Craig Fox, M. L. Manning and J. D. Amack, “A quantiative analysis of fluid flow in Kupffer’s Vesicle”, in press as an invited book chapter in “Methods in Cillia and Flagella”, Elsevier (2015). (Cover image)
  9. [pdf] Xingbo Yang, M. Lisa Manning and M. Cristina Marchetti, “Aggregation and Segre- gation of confined active particles,” Soft Matter 10 (34), 6477 – 6484 DOI:10.1039/C4SM00927D, (2014). Recommended with a commentary in the Journal Club for Condensed Matter.
  10. [pdf] R. M. Baker, M. E. Brasch, M. L. Manning, J. H. Henderson, “Automated, contour- based tracking and analysis of cell behavior over long timescales in environments of varying complexity and cell density,”  J. Roy. Soc. Interface 11(97), 20140386, doi: 10.1098/rsif.2014.0386 (2014).
  11. [pdf] Dapeng Bi, J. Lopez, J. Schwarz, M. L. Manning, “Energy barriers and cell migration in densely packed tissues,” Soft Matter 10 1885-1890 DOI:10.1039/C3SM52893F, arXiv:1308.3891 (2014). Recommended with a commentary in the Journal Club for Condensed Matter.
  12. [pdf] T. Idema, J. O. Dubuis, L. Kang, M. L. Manning, P. C. Nelson, T. C. Lubensky, and A. J. Liu, “The syncytial Drosophila embryo as a mechanically excitable medium,” PLOS ONE  8(10): e77216. arXiv:1304.4025 (2013).
  13. [pdf] E-.M. Schoetz, M. Lanio, J. Talbot, and M. L. Manning, “Glassy dynamics in three dimensional embryonic tissues,” J. R. Soc. Interface 10(89): 20130726 arXiv:1307.4454 (2013).
  14. [pdf] JD Amack, ML Manning. Knowing the Boundaries: Extending the Differential Adhesion Hypothesis in Embryonic Cell Sorting. Science 338 (6104), 212-215 (2012).
  15. [pdf] Guangliang Wang, M. Lisa Manning, Jeffrey D Amack. Regional Cell Shape Changes Control Form and Function of Kupffer’s Vesicle in the Zebrafish Embryo. Developmental Biology. Volume 370, Issue 1, 1 October 2012, Pages 52–62.  (2012).
  16. [pdf] M. L. Manning and A.J. Liu. Vibrational modes identify soft spots in a sheared disordered packing. Phys. Rev. Lett. 107 108302 arXiv:1012.4822 (2011).
  17. [pdf] K. Chen, M. L. Manning, P. J. Yunker, W. G. Ellenbroek, Z. Zhang, A. J. Liu, and A. G. Yodh. Measurement of Correlations between Low-Frequency Vibrational Modes and Particle Rearrangements in Quasi-Two-Dimensional Colloidal Glasses. Phys. Rev. Lett.107 108301 arXiv:1103.2352 (2011).
  18. [pdf] (Supp. Info)  M. L. Manning, R. A. Foty, M. S. Steinberg, and E.-M. Schoetz, “Coaction of intercellular adhesion and cortical tension specifies tissue surface tension,” Proc. Nat. Acad. Sci. 107, 28 12517-12522,(2010).
  19. [pdf] “Pulse-like, crack-like and supershear earthquake ruptures with shear strain localization,” E. G. Daub, M. L. Manning and J. M. Carlson, J. Geophys. Res. 115, B05311 (2010)
  20. [pdf] M. L. Manning, E. G. Daub, J. S. Langer and J. M. Carlson. Rate dependent shear bands in a shear transformation zone model of amorphous solids. Phys. Rev. E 79, 016110 (2009)
  21. [pdf] E. G. Daub, M. L. Manning and J. M. Carlson. Dynamic weakening due to strain localization in a constitutive model for fault gouge. Geophys. Res. Lett. 35, L12310 (2008).
  22. [pdf] J. S. Langer and M. L. Manning. Steady-state, effective-temperature dynamics in a glassy material.Phys. Rev. E 76 056107 (2007).
  23. [pdf] M. L. Manning, J. S. Langer, and J. M. Carlson. Strain localization in a shear transformation zone model for amorphous solids. Phys. Rev. E 76 056106 (2007).
  24. [pdf] M. Manning, J. M. Carlson, and J. Doyle. Highly Optimized Tolerance in dense and sparse resource regimes. Phys. Rev. E 72 056106 (2005).

Additional publications

  • [pdf] M. L. Manning, R. A. Foty, M. S. Steinberg, and E.-M. Schoetz, “Reply to Krens et al: Cell stretching may initiate cell differentiation,” Proc. Nat. Acad. Sci. 108, 3, E11 (2011).
  • [pdf] M. L. Manning, Effective temperature and strain localization in amorphous solids. Ph. D. Thesis. September 2008.